Use rebar3 for compilation.

.gitignore

 .rebar
+.rebar3
 ebin
 *.beam
 *.o

Makefile

-REBAR=rebar
+REBAR=rebar3
 
 .PHONY: compile
-compile: deps
+compile:
 	$(REBAR) compile
 
-.PHONY: deps
-deps:
-	$(REBAR) get-deps
-
 .PHONY: clean
 clean:
 	$(REBAR) clean

c_src/Makefile

+# Based on c_src.mk from erlang.mk by Loïc Hoguin <essen@ninenines.eu>
+
+PROJECT ?= enacl_nif
+
+ERTS_INCLUDE_DIR ?= $(shell erl -noshell -s init stop -eval "io:format(\"~s/erts-~s/include/\", [code:root_dir(), erlang:system_info(version)]).")
+ERL_INTERFACE_INCLUDE_DIR ?= $(shell erl -noshell -s init stop -eval "io:format(\"~s\", [code:lib_dir(erl_interface, include)]).")
+ERL_INTERFACE_LIB_DIR ?= $(shell erl -noshell -s init stop -eval "io:format(\"~s\", [code:lib_dir(erl_interface, lib)]).")
+
+C_SRC_DIR = $(CURDIR)
+C_SRC_OUTPUT ?= $(CURDIR)/../priv/$(PROJECT).so
+
+# System type and C compiler/flags.
+
+UNAME_SYS := $(shell uname -s)
+ifeq ($(UNAME_SYS), Darwin)
+	CC ?= cc
+	CFLAGS ?= -O3 -std=c99 -arch x86_64 -finline-functions -Wall -Wmissing-prototypes
+	CXXFLAGS ?= -O3 -arch x86_64 -finline-functions -Wall
+	LDFLAGS ?= -arch x86_64 -flat_namespace -undefined suppress
+else ifeq ($(UNAME_SYS), FreeBSD)
+	CC ?= cc
+	CFLAGS ?= -O3 -std=c99 -finline-functions -Wall -Wmissing-prototypes
+	CXXFLAGS ?= -O3 -finline-functions -Wall
+else ifeq ($(UNAME_SYS), Linux)
+	CC ?= gcc
+	CFLAGS ?= -O3 -std=c99 -finline-functions -Wall -Wmissing-prototypes
+	CXXFLAGS ?= -O3 -finline-functions -Wall
+endif
+
+CFLAGS += -fPIC -I $(ERTS_INCLUDE_DIR) -I $(ERL_INTERFACE_INCLUDE_DIR)
+CXXFLAGS += -fPIC -I $(ERTS_INCLUDE_DIR) -I $(ERL_INTERFACE_INCLUDE_DIR)
+
+LDLIBS += -L $(ERL_INTERFACE_LIB_DIR) -lerl_interface -lei -lsodium
+LDFLAGS += -shared
+
+# Verbosity.
+
+c_verbose_0 = @echo " C     " $(?F);
+c_verbose = $(c_verbose_$(V))
+
+cpp_verbose_0 = @echo " CPP   " $(?F);
+cpp_verbose = $(cpp_verbose_$(V))
+
+link_verbose_0 = @echo " LD    " $(@F);
+link_verbose = $(link_verbose_$(V))
+
+SOURCES := $(shell find $(C_SRC_DIR) -type f \( -name "*.c" -o -name "*.C" -o -name "*.cc" -o -name "*.cpp" \))
+OBJECTS = $(addsuffix .o, $(basename $(SOURCES)))
+
+COMPILE_C = $(c_verbose) $(CC) $(CFLAGS) $(CPPFLAGS) -c
+COMPILE_CPP = $(cpp_verbose) $(CXX) $(CXXFLAGS) $(CPPFLAGS) -c
+
+$(C_SRC_OUTPUT): $(OBJECTS)
+	$(link_verbose) $(CC) $(OBJECTS) $(LDFLAGS) $(LDLIBS) -o $(C_SRC_OUTPUT)
+
+%.o: %.c
+	$(COMPILE_C) $(OUTPUT_OPTION) $<
+
+%.o: %.cc
+	$(COMPILE_CPP) $(OUTPUT_OPTION) $<
+
+%.o: %.C
+	$(COMPILE_CPP) $(OUTPUT_OPTION) $<
+
+%.o: %.cpp
+	$(COMPILE_CPP) $(OUTPUT_OPTION) $<
+
+clean:
+	@rm $(C_SRC_OUTPUT) $(OBJECTS)

rebar.config

 {erl_opts, [debug_info]}.
 
-{port_env, [
-	{"CFLAGS", "$CFLAGS $LIBSODIUM_CFLAGS"},
-	{"LDFLAGS", "$LDFLAGS $LIBSODIUM_LDFLAGS -lsodium"}
+{pre_hooks, [
+	{compile, "make -C c_src"},
+	{clean, "make -C c_src clean"}
 ]}.
-
-{port_specs, [{"priv/enacl_nif.so", ["c_src/*.c"]}]}.

rebar.lock

+[].